Data Source URL Notes
A census of human RNA-binding proteins S. Gerstberger, M. Hafner and T. Tuschl, 2014. A census of human RNA-binding proteins. Nat Rev Genet.
PubMed: 25365966 DOI: 10.1038/nrg3813
Human Protein Atlas v17 https://www.proteinatlas.org M. Uhlen et al, 2017. A pathology atlas of the human cancer transcriptome. Science.
PubMed: 28818916 DOI: 10.1126/science.aan2507
The Cancer Genome Atlas (TCGA) https://cancergenome.nih.gov Cancer Genome Atlas Research Network, 2013. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet.
PubMed: 24071849 DOI: 10.1038/ng.2764
TargetScan 7.2 http://www.targetscan.org/vert_72/ V. Agarwal et al, 2015. Predicting effective microRNA target sites in mammalian mRNAs. Elife.
PubMed: 26267216 DOI: 10.7554/eLife.05005
ExPASy Cellosaurus https://web.expasy.org/cellosaurus A. Bairoch, 2018. The Cellosaurus, a Cell-Line Knowledge Resource. J Biomol Tech.
PubMed: 29805321 DOI: 10.7171/jbt.18-2902-002
ENCODE https://www.encodeproject.org CA. Davis et al, 2018. The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res.
PubMed: 29126249 DOI: 10.1093/nar/gkx1081
  • eCLIP data: Lab of Gene Yeo, UCSD
  • RBP knockdown (shRNA) data: Lab of Brenton Gravely, UConn
  • embryonal RBP expression data: Lab of Barbara Wold, Caltech